Objective 1: Understand how Xf moves, and the patterns of its movement, in systemic (grape, blackberry) and non-systemic (willow) plant hosts using microscopy. (Purcell)
Confocal microscopy of red willow inoculated with Xf showed that Xf can multiply to very high levels within individual xylem elements but does not move to adjacent cells in non-systemic hosts. Thus, the low populations of Xf recovered from willow by culturing represent many Xf cells within a very few colonized cells rather than fewer numbers of Xf in a larger number of cells. High magnification scanning electron microscope and modified staining methods of Xf in grape revealed “tentacle-like” structures (fimbriae) at the narrow ends and division plane of dividing Xf cells collected from expressed xylem sap of infected grape but not when collected from cultured Xf cells from PW medium. Xf aggregated on the surface of xylem vessels in PD-infected grape petioles as well as dormant infected grape tissue (green and woody stem pieces) early or late in colonization of grape xylem. The bacteria were embedded in a matrix of fibers that covered them in a net-like fashion. This matrix of Xf cells and extracellular materials (a biofilm) adhered to the xylem cell walls. The fimbriae of attached Xf connected only in contact with plant tissues. Biofilm formation appears to be a consistent feature of colonization of grape by Xf. Cells of Xf grown in a new culture provided by Brazilian collaborators produced abundant extracellular fibrils but not fimbriae, and these cells attached strongly to glass, unlike cells grown in traditional Xf media (PW, etc). Our findings suggest that Xf produces attachment structures only under specific environmental cues.
Objective 2. Understand how temperature influences the movement and survival of Xf and the incidence and/or severity of PD. (Purcell)
Field inoculations of grape at different times of the year at Oakville (1997), Davis (1997-98), Fresno (1998-99) and Hopland (1999) consistently confirmed that infections during April through May and to a much lesser in June resulted in persistent infections of Xf the following year; whereas most June, July or August inoculations resulted in non-persistent infections unless the base of canes were inoculated. At the Hopland site, recovery of early-season infected vines was the first evidence of possible climate-mediated recovery of PD-infected vines that was not explainable by pruning eliminating the Xf infections.
Inoculations of vines during April 2000 in San Luis Obispo Co. and Santa Barbara Co. suggest that cool temperatures (not exceeding 16 C) following inoculation may not allow systemic infection by Xf. The highest populations of Xf occurred at the bases of symptomatic canes and decreased towards the tip of sampled canes in experimentally inoculated or naturally infected vines.
Experimental freezing of dormant, PD-infected potted vines cured the plants of PD at rates of 0 to 70%after exposures to temperatures ranging from -2 to -10 C for 3 successive freezing exposures. Cane segments treated identically at the same time never recovered, suggesting that some aspect of plant physiology, rather than the direct action of freezing alone, kills Xf by freezing in grape xylem. The survival of Xf after freezing in various liquid media further supports this view.
Objective 3: Determine whether vegetation barriers or trap crops can reduce the incidence of PD in riparian areas. (Weber)
Two trap crop trials have been established on either side of a large vineyard in Napa. One trial borders the Napa River, the other Milliken Creek. Vines are spaced 9 feet (rows) by 5 feet (in-row). In each trial, St. George rootstock is planted at the ends of adjacent rows to create the trap crop treatments. Trap crop treatments include the first 6 vines in 12 adjacent rows. In each trial, there are three replicate trap crop planting and three control plantings where Chardonnay or Pinot Noir are planted to the end of the row.
The vineyard was planted in May 1999. By October 2000, trap crop vines along the Napa River had reached the upper trellis wire and had filled in well. They were pruned in December along with the rest of the vineyard leaving wood on the ?fruiting? wire. On the Milliken Creek side, deer did considerable grazing damage throughout the year and the vines did not develop as well. Admire (soil-applied imidacloprid) was applied to trap crop vines in November 1999. Due to concerns about its efficacy, this will be replaced with a spring 2001 treatment of Provado (foliar-applied imidacloprid). BGSS were monitored in 2000 in both trials using yellow sticky cards placed at the ends of rows. BGSS were detected in all treatments, although counts were relatively low. Per-trap catch totals ranged from 2 to 23 BGSS for the trapping period March-October. A PD disease survey was conducted in both trials in Sept. 2000 extending approximately 40 vines into the vineyard. Only 5 vines were found showing PD symptoms.
Monitoring and mapping will continue in 2001.
Objective 4: Develop transformation and transposon mutagenesis for Xylella fastidiosa. (Kirkpatrick)
Procedures were developed to successfully introduce the transposon, Tn5, into two different strains of Xylella fastidiosa (Xf). Electroporation conditions that were similar to those that have been used to electroporate DNA into several Xanthomonas species were found to be efficacious for electroporating DNA into Xf. Several attempts to transpose Xf with two different Tn5 and two Tn10 suicide constructs failed to produce transposed Xf cells. However, using identical electroporation conditions, we obtained several hundred Tn5 mutants of both the Fetzer and Temecula Xf strains using a ?transposome? complex composed of a transposase protein/DNA complex containing Tn5. Southern blot analysis showed these were random, single, Tn5 inserts throughout the Xf genome. Sequence analysis of Xf genomic DNA that flanked the Tn5 insertion identified several genes that were found in the CVC strain of Xf. We now have approximately 500 Tn5 mutants stored at ?80; inoculation of grapevines and other analyses of the mutants will begin in a few months after several thousand mutants have been obtained.
Three, 1.8 kb Xf plasmids were cloned and sequenced from the UCLA Xf strain. The largest open reading frame (ORF) on these small Xf plasmids had significant homology with another phage replicase gene, suggesting this Xf ORF encodes a plasmid replicase gene. Initial cloning of these plasmids probably interrupted the promoter for this ORF and we have since recloned these plasmids at another location on the plasmid. We are now introducing the KanR gene from the Tn5 construct described above, which we know is expressed in Xf, into the cloned Xf plasmids. In this manner we hope to construct an Xf/E. coli shuttle vector that will greatly facilitate molecular genetic analyses of Xf.
Objective 5: Isolate and identify endophytic bacteria that systemically colonize grapevine xylem. Identify natural, or genetically engineer, endophytes to be antagonist to Xf. (Kirkpatrick)
Several hundred bacterial isolates were obtained from both healthy and Xf-infected grapevines located in Napa and Yolo counties. Specific grapevines of two cultivars were sampled bimonthly during 1999 and 2000. In addition, healthy appearing grapevines that were growing in the middle of vineyards that were decimated by PD were also randomly sampled. Four different media were used to cultivate the bacteria, however no significant differences in the types or numbers of bacteria were observed using the different media. Gram stains were performed on all of the isolates so that the appropriate Biolog plates can be used to initially identify the isolates, at least to the genus level. Beginning in the spring these isolates will be pin-prick inoculated into grapevines growing in the greenhouse. After several weeks, attempts will be made to recover the bacteria from sections of xylem that are 2 or 3cm from the point of inoculation. Any bacteria that are found to systemically colonize grapevine xylem in reasonable concentrations will be tested for natural antagonism towards Xf. We are now screening a random peptide library for synthetic peptides that are inhibitory to Xf. If these peptides are identified, attempts will be made to genetically engineer grape endophytes to express these peptides within grapevine xylem.
Objective 6: Genetics of Resistance to Xf. (Walker)
A Design II mating design with a set of 6 females by a set of 6 male parents, from which we will select sets of seedlings to study the inheritance of Xf resistance, is completed. The mean expression of resistance within a given female across all males and similar comparisons of males across females will allow us to draw conclusions about the inheritance of Xf resistance.
We define Xf resistance as the ability of a genotype to limit the movement of Xf, particularly in a downward direction, and have tested a set of resistant and susceptible individuals to determine whether this definition is valid. The known susceptible genotypes were V. rupestris ? A. de Serres? (the female parent of the 89 population), Chardonnay and the V. rupestris x M rotundifolia genotype 8909-19; potentially resistant genotypes were 8909-04 and 8909-11; and the resistant genotypes were 890915 and 890917. After 4 weeks, Xf was easily detected in the three susceptible genotypes. By 16 weeks, the differences among resistant and susceptible genotypes are very clear in terms of both symptom expression in leaves and unevenly lignified stems and ELISA readings. ELISA is cheaper, faster, quantifiable and more simple than PCR detection of Xf, and can reliably detect 10,000 cfu/ml of Xf in ground plant sap.
150 samples with duplicate readings can be processed in a day at a material cost of $0.28 per plant sample. IC-PCR detection is 10 more sensitive, but is not quantifiable and costs about $1.44 per sample. Nested PCR gave very good results and is 100 times more sensitive than IC-PCR, but few samples can be run per day, and the cost of materials and labor is high ($2.88 per sample). We also examined spot-PCR which would allow several hundred samples to be run per day, but the sensitivity is equivalent to ELISA and cost $2.70 per sample. (All costs exclude labor).
We are mapping Xf resistance in the V. rupestris X M. rotundifolia 9621 population (previously used for Xiphinema index resistance). We have AFLP marker data on about 70 of the 150 individuals and are testing 4 replicates from each of these 150. Xf resistance data from 70 individuals are complete and the others are due for analysis in about 4 months. We plan to place Xf resistance on our existing AFLP based map. If the resistance trait does not place on the existing map, we have seeds for a second mapping population based on a cross of the 8909-15 X 8909-19; a resistant by susceptible genotype which will allow greater power in mapping the resistance genes. However, this seedling population will have to be grown out from seed, propagated and screened for resistance and marker information. We also have (8909-08 and 8909-23) to Chardonnay, which should also segregate widely.
We bench-grafted Chardonnay on each of the following rootstocks: AXR#1, St. George, 3309C, 101-14Mgt, Schwarzmann, 44-53 Malegue, Riparia Gloire, 1616C, Lenoir, 5BB, 5C, Börner, 110R, 1103P, Harmony, Freedom, and Ramsey, and Chardonnay (control), Riesling, Sylvaner, Chenin blanc, and Colombard.
Own-rooted Chardonnay, Riesling, Sylvaner, Chenin blanc and Colombard were also inoculated. We have evaluated all three reps for PD expression and ELISA sampling to determine the extent of downward movement is continuing. The vines were cut back to basal buds, are now re-growing and will once again be evaluated for symptoms and by ELISA.
Objective 7: Determine whether xylem chemical composition is involved with PD resistance or susceptiblity in grape varieties and common Xf plant hosts. (Andersen)
In an effort to determine whether xylem fluid chemistry is related to resistance to Xylella we investigated the chemistry of Vitis genotypes covering a wide range of resistance/tolerance. Xylem fluid chemistry of 10 grape genotypes belonging to 5 species has been characterized, although only the amino acid data was presented. Total amino acids varied over 4-fold, and many amino acids only occurred in less than 10uM or trace quantities. A complete correlation with resistance will await compilation of organic acid and sugar data. Total amino acids in xylem fluid collected from Chardonnay grafted on 4 different rootstocks showed an effect of rootstock and of infection with Xylella fastidiosa. Xylem fluid of Chardonnay on 3309 rootstock tended to be most dilute of the rootstocks and XF infection increased total amino acids in xylem fluid of Chardonnay on all rootstocks except SO4. Arginine was the amino acid that showed the biggest increase in amino acids with XF infection. A more complete analysis of the effect of xylem chemistry of grape genotypes on resistance to Xylella fastidiosa and the change in chemistry with Xylella fastidiosa infection awaits further research.
An investigation is underway to determine whether resistance to Xylella fastidiosa is influenced by xylem fluid chemistry across plant species common to both Florida and California. Xylem fluid chemistry of 32 host plants species/cultivars was analyzed and natural X. fastidiosa (resistant/susceptible) was noted by PCR analysis. About 50%of the plant species/cultivars were Xylella negative. Those that were Xylella-negative were mechanically inoculated with X. fastidiosa during the fall of 1999. After 4 weeks only one species was positive, Vitis rotundifolia (wild grape). Each of the Xylella negative species/cultivars have also been sampled fall 2000 and are currently being analyzed via PCR. Those species that still do not harbor Xylella may be inoculated with different strains for confirmation of resistance to multiple Xylella strains. In vitro nutrient requirements of Xylella have been studied for 3 months without much success. A UCLA strain of X. fastidiosa was subjected to 3 months of experimentation using Chang and Donaldson?s chemically defined media. This UCLA strain grew well on PD or PW+ but did not grow on the chemically defined media. We switched strains to ATCC 35881 and tested this strain on all the media. The result was that it grew well on all the media and it even grew slowly on a media consisting of glutamine as the only amino acid source. Thus, nutritional fastidiousness is extremely strain dependent. Additional experiments will be performed with a different strain (probably the Temecula strain) after consultation with B. Kirkpatrick, S. Purcell and A. Walker.
Lytic peptides were extremely effective against Xylella. They act by disrupting cell membrane integrity of bacteria but not eucaryotic cells of higher animals. Cecropins were one to three orders more effective than tetracycline. Xylella fastidiosa incubated with Cecropin A and B at 1 uM resulted in 100%inhibition of growth; incubation with Xylella at 0.1 uM resulted in 95%inhibition. Indolicidin was a fairly strong inhibitor of Xylella fastidiosa with 100%inhibition at 9.5 uM. Magainin II was followed by Magainin I in potency. For tetracycline 100%inhibition was achieved at 112 uM. These compounds may serve as a potent naturally occurring pesticide against Xylella.